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Human element [ hs50 ]


Position: chr16:54,350,345-54,351,685 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: IRX3 - CRNDE

Timepoints:

Publications:

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGTCACCATTGCCATTTGTACCaagatagtgagtccctgcaagcaagcagtgtgtctcct
cattacacatgtgtcttggcccagcaggtgggctgaccactcaacgaggttcctccaaat
cagagcagggaaagtcacaggcacatgccccagtgttccaaggaggagacgttagctgga
gaggagctgcctccgggaacatctctctgccagccgctctagctcaccatccagggccac
tctaattggctcccttctcagatgacagcacggtgtgatgtaaccaggttagccaatgct
ggtcttcaggagaagcccacacatcccaaagggagcatcttcccccatccccagcacctc
tctccatgcctgcttcccagcgcttccacagctttaagagttccataaatgctgataatt
gctacattaaacttcagtttattattttatttgggtgcaggtatgcggatgatatgaggc
ttcgctgcatttacatacaaattgaagatttttattaatcagtccagtaccaggaatcca
acgttaacagtccatcaggcccttaaatacatttggtgacatttttaccatgcattagca
tgatagggcaaggcgaatataatgtaccaatgattgcttttccattgaaagcacaaacgg
tttcatttttcctgtcatctcaaataagtgttaaagagggtttggaggctgttgtgtccg
cgccgtatgctcaggacttacaaacactgatgagcacattaaataaccattagcgtctgg
gcctggaccacagcaccgtcccttctcttcagaatttattctttgatttaaagtgaaggc
aatctgtggttgctttcataaagtcccgcggcccctccattctccctccaacaaaatgca
ttacaacagtaattttatgactgttaaaataactgtcgttaacaagcacttaattaaaat
gtacaataaatagccgactacagccttatctgctctccggagcggcctcagcccgagact
gcaatgcccaggcctgctgttgcccagcttgtttgcagattaattgcttttcgagctggc
aggagctgcctcttcagcagccagatcataaatgaccagatagggactttatcaatcagg
cgagtgcgtctgtgaccactggtggacagggaggccagctggggagcggttggagggcaa
gtcttggataggtggaggtactgaccggggagggagtcggagtgggcgtcggtggaggtg
ggtaggggagaaaacctgcaggaaggtgtccccagtgggctggcctgctccagacctcat
tTTGGACATCTCTGGCCGAGT
Primer
(+)tgtcaccattgccatttgtacc
(+)actcggccagagatgtccaa