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Human element [ hs39 ]


Position: chr16:54,618,981-54,620,264 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: IRX3 - CRNDE

Timepoints:
e11.5

Publications:

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AACTAGGGTCTTTCTTAGGCTGGAAcagacccattttccagaggtgccttcgggaggttc
tactccacgcccagctgaaatctccaggctctcaacagctggaggagaatagcagggctt
tgggaagaacttaatagaatccttaatgccgctaacaatccactgctattgaactgcatt
aagtagatattatggaaagacaaagagctaaatagctcgacatcaccctcattcggcatg
cggcccccggccgagaccattttaagggcagtgccattgttgctgcactgcccaggttag
ctttaaattgcaaatgataccctgaaaaggaaagagaagtggttttcttttcttctgtcc
tcgctgtctccctctttctctctcactctgtccccactctctctctctcaaaatggccct
tgcagaaagaaaatcattttaggccataagaaagtgaaaggcattgttaacatggctcgg
accgtggcaaatgaaatacatcatgagctctggagctgaaagctacactcgagctgtttt
attttgatgctttggaatgtggtccacatgagaacataaacaatgccaaatctgtatgaa
ttaataggccgggcttgacgtatttctctttgtttgaggccaaacaggcgggagttgggg
gtgcgggaggaggaggagaagaagggagaggagaatcttatttgattaaaaaaaaatcca
atattctagctgataggaggagtgtgtgcggcaacccttcttaagacgggcctttcagaa
tcaatggccaagcagccggccaccacttgaagtttcatcgctagctatgatcaaaatgct
ttaaaaaaaaaaaaagtctccatagaattgtttgcaaactgcaaagtgcttcagcgactg
acatgaaaatgctggaagctggaaacctattcccaggcagaggccttctctgtcaccttg
gtgggtgaataattgtgccttttgcatacgccttgtcatcagcagcaggaatgagggggc
cccaaggaccgccctggcagcacgggcgttgcaccagcagagtaaattaaaacacggatt
agagcaagtatgattggggatgacaagcggggcgggtgtagccgcggaatgagccgtgtt
gcccatatggtcctcggaaagcccacgcagcgcagctctctccccagcctgctccagctg
cccgtctgaagggggcacttaggaggcctcaagccattttctggaactgggaaaattagT
TTCCCTTCTTTACGAGTTCAGAAA
Primer
(+)AACTAGGGTCTTTCTTAGGCTGGAA
(+)TTTCTGAACTCGTAAAGAAGGGAAA